- CLI toolbox (ca_source_extraction) by Eftychios Pnevmatikakis (Simons Center for Data Analysis)
- Brick for GUI by Thomas Deneux
- Translational movement correction by Manuel Guizar
- Elastical image registration by Stefan Klein and Marius Staring
- QT clustering (partially modified) by Yair Shimshoni
- Calculation of Polygon centroid by H.J. Sommer III, Ph.D (The Pennsylvania State University)
- Subdir by Kelly Kearney
- MES by Gergely Katona