Cell localisation and identification toolbox

Performs cell localisation and identification on previously motion corrected MESc files in which each measurement unit was scanned on the same scene.


  • Finds somas and dendrites in each selected measurement unit based on their activity
  • Correctly handles spatially overlapping components
  • Assigns the components found in different measurement units to each other with a clustering algorithm
  • If a given component was not active in a measurement unit, copies the missing ROI into the measurement unit
  • Extracts the fluorescent signal from the found ROIs